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91.
RNA‐seq analysis reveals new candidate genes for drip loss in a Pietrain × Duroc × Landrace × Yorkshire population 下载免费PDF全文
Bojiang Li Kaiqing Liu Qiannan Weng Pinghua Li Wei Wei Qifa Li Jie Chen Ruihua Huang Wangjun Wu Honglin Liu 《Animal genetics》2016,47(2):192-199
Drip loss, one of the most important meat quality traits, is characterized by low heritability. To date, the genetic factors affecting the drip loss trait have not been clearly elucidated. The objective of this study was to identify critical candidate genes affecting drip loss. First, we generated a Pietrain × Duroc × Landrace × Yorkshire commercial pig population and obtained phenotypic values for the drip loss trait. Furthermore, we constructed two RNA libraries from pooled samples of longissimus dorsi muscles with the highest (H group) and lowest (L group) drip loss and identified the differentially expressed genes (DEGs) between these extreme phenotypes using RNA‐seq technology. In total, 25 883 genes were detected in the H and L group libraries, and none was specifically expressed in only one library. Comparative analysis of gene expression levels found that 150 genes were differentially expressed, of which 127 were upregulated and 23 were downregulated in the H group relative to the L group. In addition, 68 drip loss quantitative trait loci (QTL) overlapping with 63 DEGs were identified, and these QTL were distributed mainly on chromosomes 1, 2, 5 and 6. Interestingly, the triadin (TRDN) gene, which is involved in muscle contraction and fat deposition, and the myostatin (MSTN) gene, which has a role in muscle growth, were localized to more than two drip loss QTL, suggesting that both are critical candidate genes responsible for drip loss. 相似文献
92.
Canopy closure estimation in a temperate forest using airborne LiDAR and LANDSAT ETM+ data 下载免费PDF全文
《植物生态学报》2016,40(2):102
Aims Forest canopy closure is one of the essential factors in forest survey, and plays an important role in forest ecosystem management. It is of great significance to study how to apply LiDAR (light detection and ranging) data efficiently in remote sensing estimation of forest canopy closure. LiDAR can be used to obtain data fast and accurately and therefore be used as training and validation data to estimate forest canopy closure in large spatial scale. It can compensate for the insufficiency (e.g. labor-intensive, time-consuming) of conventional ground survey, and provide foundations to forest inventory.Methods In this study, we estimated canopy closure of a temperate forest in Genhe forest of Da Hinggan Ling area, Nei Mongol, China, using LiDAR and LANDSAT ETM+ data. Firstly, we calculated the canopy closure from ALS (Airborne Laser Scanning) high density point cloud data. Then, the estimated canopy closure from ALS data was used as training and validation data to modeling and inversion from eight vegetation indices computed from LANDSAT ETM+ data. Three approaches, multi-variable stepwise regression (MSR), random forest (RF) and Cubist, were developed and tested to estimate canopy closure from these vegetation indices, respectively.Important findings The validation results showed that the Cubist model yielded the highest accuracy compared to the other two models (determination coefficient (R2) = 0.722, root mean square error (RMSE) = 0.126, relative root mean square error (rRMSE) = 0.209, estimation accuracy (EA) = 79.883%). The combination of LiDAR data and LANDSAT ETM+ showed great potential to accurately estimate the canopy closure of the temperate forest. However, the model prediction capability needs to be further improved in order to be applied in larger spatial scale. More independent variables from other remotely sensed datasets, e.g. topographic data, texture information from high-resolution imagery, should be added into the model. These variables can help to reduce the influence of optical image, vegetation indices, terrain and shadow and so on. Moreover, the accuracy of the LiDAR-derived canopy closure needs to be further validated in future studies. 相似文献
93.
Spatial distribution of ant workers and, notably their aggregation/segregation behaviour, is a key-element of the colony social
organization contributing to the efficiency of task performance and division of labour. In polymorphic species, specialized
worker castes notably differ in their intrinsic aggregation behaviour. In this context, knowing the preponderant role of minors
in brood care, we investigate how a stimulus such as brood can influence the spatial patterns of Pheidole pallidula worker castes. In a homogeneous area without brood, it was shown that minors display only a low level of aggregation while
majors form large clusters in the central area. Here we find out that these aggregation patterns of both minors and majors
can be deeply influenced by the presence of brood. For minors, it nucleates or enhances the formation of a large stable cluster.
Such high sensitivity of minors to brood stimuli fits well with their role as main brood tenders in the colony. For majors,
interattraction between individuals still remains the prevailing aggregation factor while brood strongly influences the localisation
of their cluster. We discuss how the balance between interattraction and sensitivity to environmental stimuli determines the
mobility of each worker castes and, consequently, the availability of minors and majors to participate in everyday colony
tasks. Moreover, we will evoke the functional value of majors’ cluster location close to the brood, namely with respect to
social regulation of the colony caste ratio.
Received 30 May 2005; revised 11 January 2006; accepted 13 January 2006. 相似文献
94.
Facultative joint colony founding by social insects (pleometrosis) provides an outstanding opportunity to analyze the costs
and benefits of sociality. Pleometrosis has been documented for a range of social insects, but most studies on the adaptive
benefits of this behavior are restricted to the Hymenoptera. In this study, we provide the first analysis of costs and benefits
associated with pleometrosis for Australian Dunatothrips, which form domiciles by glueing together phyllodes (leaves) of their Acacia host plant. In Dunatothrips aneurae, the distribution of foundress numbers per nest indicated that females formed associations non-randomly. Furthermore, average
group size was independent of both the number of foundresses on the host plant and the number of mature colonies, suggesting
that this behavior was not simply a response to limited availability of nesting sites. Although per capita reproduction declined
with increasing group size, we also identified two benefits of pleometrosis: (1) individual foundresses in groups had higher
survival than solitary foundresses during the brood development period, and (2) larger colony sizes resulting from pleometrosis
provided a benefit later in colony development, because a higher proportion of D. aneurae adults survived invasions by the kleptoparasite Xaniothrips mulga when colony size was larger. These results demonstrate that the reproductive costs of pleometrosis are at least partially
counterbalanced by survival benefits.
Received 4 April 2006; revised 9 September 2006; accepted 20 September 2006. 相似文献
95.
Respiration, which is the second most important carbon flux in ecosystems following gross primary productivity, is typically represented in biogeochemical models by simple temperature dependence equations. These equations were established in the 19th century and have been modified very little since then. Recent applications of these equations to data on soil respiration have produced highly variable apparent temperature sensitivities. This paper searches for reasons for this variability, ranging from biochemical reactions to ecosystem‐scale substrate supply. For a simple membrane‐bound enzymatic system that follows Michaelis–Menten kinetics, the temperature sensitivities of maximum enzyme activity (Vmax) and the half‐saturation constant that reflects the affinity of the enzyme for the substrate (Km) can cancel each other to produce no net temperature dependence of the enzyme. Alternatively, when diffusion of substrates covaries with temperature, then the combined temperature sensitivity can be higher than that of each individual process. We also present examples to show that soluble carbon substrate supply is likely to be important at scales ranging from transport across membranes, diffusion through soil water films, allocation to aboveground and belowground plant tissues, phenological patterns of carbon allocation and growth, and intersite differences in productivity. Robust models of soil respiration will require that the direct effects of substrate supply, temperature, and desiccation stress be separated from the indirect effects of temperature and soil water content on substrate diffusion and availability. We speculate that apparent Q10 values of respiration that are significantly above about 2.5 probably indicate that some unidentified process of substrate supply is confounded with observed temperature variation. 相似文献
96.
Susan Leekam 《Philosophical transactions of the Royal Society of London. Series B, Biological sciences》2016,371(1686)
Early psychological theories of autism explained the clinical features of this condition in terms of perceptual and sensory processing impairments. The arrival of domain-specific social cognitive theories changed this focus, postulating a ‘primary’ and specific psychological impairment of social cognition. Across the years, evidence has been growing in support of social cognitive and social attention explanations in autism. However, there has also been evidence for general non-social cognitive impairments in representational understanding, attention allocation and sensory processing. Here, I review recent findings and consider the case for the specificity and primacy of the social cognitive impairment, proposing that we should focus more explicitly on clinically valid features for insights on the integration of ‘social’ and ‘non-social’ cognition. 相似文献
97.
A three-dimensional operational hydrodynamic model, developed at the Institute of Oceanography, University of Gdańsk was used
to forecast hydrological conditions in the Oder Estuary. The model was based on the coastal ocean circulation model known
as the Princeton Ocean Model (POM). Because of wind-driven water backup in the Oder mouth, a simplified operational model
of river discharge, based on water budget in a stream channel, was developed. Linking these two models into a single system
made it possible to forecast water levels, currents, water temperature, and salinity in the estuary. A good fit between the
observed and computed data allowed to consider the model as a reliable environmental tool. Obtaining a hydrological forecast
via a quick website access gives potential users an opportunity to predict the day-by-day course of processes that may affect
different areas of human life and activities, e.g., navigation, port operations, flood protection of coastal areas; the predictions
may also be used in studies of coastal processes in the estuary. 相似文献
98.
99.
Growth of 2659 Atlantic cod Gadus morhua aged 4 to 9 years examined in Placentia Bay, Newfoundland, peaked in most cases in June and was at a minimum in October or November. Water temperature, partial fullness index ( I P ) and gonado‐somatic index ( I G ) explained between 31 and 52% of the monthly variability in growth. Temperature and I P of capelin Mallotus villosus had significant effects on growth of all age groups and explained most of the variance for ages 6–8 and 4–5 years, respectively. The I P of large invertebrates (ages 4 to 7 years), sandlance ( Ammodytes sp. age 6 years) and demersal fishes (age 9 years) had age‐specific effects in the model. Overall, amphipods, decapods and echinoderms dominated the Atlantic cod diet in most seasons, but fish consumption by Atlantic cod was high in June and July, particularly on capelin. The rapid increase in somatic mass during June and July occurred despite cold water temperatures ( < 3° C at 50 m) and moderate to high gonado‐somatic index. The findings of this study suggest that when food was not a limiting factor, growth tended to increase even when Atlantic cod occupied colder waters, but when food was limiting, the opposite may have occured. 相似文献
100.